I misstated and accept full responsibility for your confusion. The Table of Contents (TOC) fond size, color and decoration are defined in the "input" file. The html code is the customary code for links: color blue, decoration underline. Calibre simply passes that through without modification. Let me try to rephrase my question.
Is there a possible way of taking the "input" file and either in the parsing or structuring process to use within the recipe a user defined CSS style sheet or template to modify the font size, color and decoration? I know it can not be done with "extra_css" on a mobi conversion. But can it be done with a user defined style sheet or template?
So very sorry for the confusion. If you are still confused, I will leave the subject alone and move on.
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