Calibre
Not sure how you transfer books from iBooks, but once you figure it out, I would recommend you begin using Calibre. It is a full featured ebook management program that will not only maintain a library of your ebooks, but allow you to transfer them to almost any ereader (Kindle, Kobo, Nook, Sony, iBooks, Marvin, etc., etc.). The beauty is that when you decide to change ereaders, all your books are safe and sound in one place. I switched from Kobo to iBooks to Marvin with ease.
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