I found how to fix the kobo. In fact it's really simple. In supposing recovery is mount as /media/recoveryfs and root as /media/rootfs. I fix it with this command:
rm -rf /media/rootfs/*
cd /media/rootfs/
tar xvzf /media/recoveryfs/upgrade/fs.tgz
That's all.
@mdclements I don't broke my kobo ;-)
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