I appreciate all the responses so far. Here is what I have done so far.
1. I generated the epub version of my PDF using Calibre.
2. When I use the Calibre reader to read the contents the generated cover page keeps the fonts and I can read the text. The body of the book is mostly gibberish.
3. In Sigil also I can read the cover page and the rest is same as in #2.
4. ibook application on my itouch is similar to #2 and #3.
I have not embedded the fonts yet. My question is how come Calibre is generating the cover page keeping the fonts in tact while the body of the book does not keep the fonts?
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