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So you are saying the files are in your dropbox but not your pc?? This seems to be a problem with dropbox and not calibre. But I've had similar problems with dropbox, what I do is turn off dropbox and then turn it back on or reboot the computer so that the dropbox sync can start again. Once you are sure dropbox has updated all your files to your pc, then all your books should show up in calibre. However if calibre has already overwritten the database file, does it still recognize the missing books??
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