Warning(prcgen): Cover invalid and was not built with the book : /var/folders/Dm/DmpXZclPH1KXvbHFzK9XqE+++TI/-Tmp-/mobi-6USM65/OEBPS/cover.html
I figured this one out by hacking at the code - the file hadn't been built properly by the conversion house, and while it worked fine in the epub, it showed its flaws during the conversion process.
I think the epub to mobi conversion process is under control now - touch wood.
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