Originally Posted by PageLab
Yes, cross-references works fine in CS6, but if you have too many in your file, Indesign's performance will degrade pretty fast, and some other issues may appear. Also, cross-references imported from Word aren't very reliable.
I would do some troubleshooting first:
1. Rebuild your Indesign Preference file (tutorial: http://www.printingforless.com/blog/...applications-2)
2. Export your file to IDML and open it. Try to export to ePUB again.
See if this helps.
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