When you plug your Nook into your computer with the USB cable, you have to "turn on USB storage" on your Nook and you should see two drives appear on your computer, one titled "MyNook" the other "Removable Disk".
On the one titled Removable Disk, you should have a Nook folder. Inside that, you should have a MyDocuments folder. When I copy ePubs to that folder they show up in the Nook app.
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