I see from your debug log that you still have installed legacy versions of the Goodreads metadata plugins that no longer work. I would suggest uninstalling both the "Goodreads Covers" and "Goodreads Metadata" plugins. If you cannot do it from the gui, do it from a command line with:
calibre-customize -r "Goodreads Covers"
calibre-customize -r "Goodreads Metadata"
In regards to your Mobi error, all mobi files are working fine for me. Could you PM me a link to one of the files giving you an error?
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