I took mine out and used "dd" to make a clone of the original then restored the clone to the new larger card then resized the KOBOeReader partition with "fdisk" reformatted and it all works. If you have content you might want to archive the data on the KOBOeReader partition.
You cannot clone the internal memory while it is in the reader as the OS partitions are masked by the i.MX processor.
I've never had an issue with reformatting the KOBOeReader partition just make sure you keep the volume name the same.
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