[melajara]

What's the point of having 1000+ eBooks if you can't EFFICIENTLY search them for keywords, phrases etc?

To give us the equivalent of Google Desktop would be a good start but just a start as organizing the books (or research papers) in lists of subjects (kind of saved indexed previous searchs) would be quite useful for organizing your work.

And this is just the beginning as one could envision the same kind of application to decouple or cross check personal notes with underlying references or (semi) automatically inject inside notes hyperlinks to other notes or printed material.

Besides, I would like to see a good graph application to again (semi) automatically build up conceptual maps from your stored eBooks.