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If you made all your changes via the USB interface, then you probably didn't damage the actual partition tables within the reader. The exported internal memory is actually a partition within a built-in SD card inside the reader. So, it sounds like you created a partition table within a partition. Just create a new FAT32 filesystem on the "bare" exported drive, and don't try to create any partitions within it. If the reader boots up properly, then go into the configuration and make it reformat the internal storage again. It will put back the system directory and all the necessary applications and config files that should be there.
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