Currently, my Nook is on loan to a friend so I cannot research this feature. But if someone with a nook can describe how it is implemented that may be sufficient to get started on it in calibre.
Look for some sort of file on the Nook (probably an XML, JSON or SQLITE file) using windows explorer that specifies the books in each shelf. Then try making changes to that file using a text editor and see if the changes show up when you disconnect the Nook.
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