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It would be esiest to do it with a simple .bat file (assuming you are on windows) but in Linux it would be similar. It would look something like this:
Find and modify the global.py to reflect the path to library 1 and save it as "global.lib1" and then change it to reflect the path to library 2 and save it as "global.lib2"
Copy and paste this into notepad and save it as "Library2.bat"
rem Change global.py for library 2 and launch Calibre
copy "c:\file path\global.lib2" "c:\file path\global.py" /y
"C:\Program Files\calibre\calibre.exe"
Copy and paste this into notepad and save it as "Library1.bat"
rem Change global.py for library 1 and launch Calibre
copy "c:\file path\global.lib1" "c:\file path\global.py" /y
"C:\Program Files\calibre\calibre.exe"
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