In Preferences, go to Metadata plugboards.
If you already have a series column in your library, in format choose 'epub', in device chose 'Nook', and in Source template copy
{series}{series_index:0>2s| - | - }{title}
in Destination field choose 'title'
On my Nook, this results in books sorted by author and then series, series number and then title:
Jeffry P. Lindsay
Dexter Morgan - 01 - Darkly Dreaming Dexter
Dexter Morgan - 02 - Dearly Devoted Dexter
etc.
I LOVE this about Calibre. My Nook is all neat and books are easy to access in the proper order.
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