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Originally Posted by Lily7
I have these same questions! I would also like to know: is it pushing books to the device via calibre that causes problems, or having them processed by calibre at all?
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Yes, you can send bad books to the device using calibre. Calibre updates the metadata when it sends, but doesn't touch the areas of the files that I think are the likely causes of the processing problems. But, a conversion should fix the problems. This will force a rewrite of all of the book and it should remove the problems.
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I ask because I've tried very hard to learn how to edit the epubs via sigil but I just can't get it, so I need Calibre in the meantime for adding book covers and removing some formatting, as well as removing something else sometimes. But a lot of times my ebooks are kinda wonky one way or another and I often wonder if it's calibre.
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Loading an epub into calibre and then sending it to the device won't change the formatting. If you do a conversion, it can change depending on the options.