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As far as I am aware, no files are or should I say, were open?
The way I normally use calibre is to have the Cybook showing the Library. Calibre is running but with nothing open. Plug in the Cybook, Calibre then detects it and copies the news feeds to the SD card.
The only other thing running is my Mail app on the MAC.
At that point all I try to do is (from the Finder) Eject the Cybook & SD Card.
As discussed, this fails & so I close Calibre, eject Cybook, re-start calibre ready for the next days News.
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