The guiding principal behind calibre's ebook management is search and filter. So much so that you shouldn't ever touch the calibre library and the books inside of it as it's stored on your computer. If you need a book search for it. If you want to get it out of calibre use the Save to Disk option. So yes, the whole point of calibre's management features are to let you be lazy. Instead of spending hours organizing it lets you spend minutes finding what you want so you can read it.
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