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I have Python installed in a folder called "Python27", and the script "kindlestrip.py" in a folder called "Tools".
What I do is to start a command prompt, change directory to the one containing the book I want to strip the source from, and type in:
\python27\python \tools\kindlestrip.py book.mobi bookstrip.mobi
That processes the input file "book.mobi" and creates a stripped output file called "bookstrip.mobi".
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