@Hitch, I couldn't agree more about people not understanding (or using properly) Word's features. Years ago, I was using it (with carefully prepared templates) successfully to desktop publish beautiful stuff that had previously been done (badly and taking an eon in time) in Ventura Publisher and/or Pages. Word (even Word 2.0!) was and is spectacular for end user publishing...in the right hands.
I would take issue, however, with Scrivener "prettifying" - I would argue that its purpose is just the opposite. It is not a Word processor and trying to make it one just makes god kill kittens (although, I think 3.0 may've surrendered to the masses of people who don't read the instructions on the tin). Please everyone - think of the kittens!
But I digress.
@MarjaE's issue (and forgive me MarjaE if I've got the wrong end of the stick), seems to me to be that instead of starting with a method, MarjaE (and, indeed we Mobilereaders) is/are starting with a solution (e.g. software).
As someone who dealt with programmers for the last 20 years (and research scientists for 15 years before that), I saw this all the time. When you're an expert with a hammer, everything looks like a nail.
So, I would suggest that one needs to step back and figure out what needs to be done. e.g. (obviously simplified):
- I need to have research sources easily searchable (by subject)
- I need to have my work/notes searchable (by subject)
etc...
Once you've got this straightened out, you've basically got your requirements and then you can look to which solution
and method suits them - and you - best.
If it were me (using Scrivener, for instance - but
only for an example), I would create a single project and whack
all the sources into Research, with each source getting its own "index card" (maybe name of publication/author as the title, and the details in the body of the card...whatever).
Then I would create a new project for the actual publication/paper and as required, drag a
copy of the appropriate references for that particular subject/work into its Research folder.
Of course, if it's one honking big research paper, then I'd use the project with all the sources.
Whatever you use, I think you've got to get everything under some kind of control and this (speaking from experience) sometimes feels like it'll take longer than the actual book/paper/thing you're working on. It's a daunting task, but like cleaning out the garage, it's oh-so-worth it when you're done.
Over the years (too many years) I've worked with people who have used, successfully:
- Word (I would create a specific directory for all the documents & notes and have them all in one place - makes searching so much easier)
- One Note (my colleague used my "one honking big file" theory but with ON). Everything went in it.
- DevonThink (not my cuppa but some swear by it). I would've added Circus Ponies Notebook but that's apparently gone...poof.
- Scrivener (and every other novel writing solution in the universe)
Good luck and I feel your pain.