I also received my quotes and all 66 books seemed to be transferred. I don't think I have any duplicates. The later dune books (The second Prelude trilogy onwards) no longer have drm while one of the Asimov books (Robot Visions) now have drm, even though it looks identical to the fictionwise drm-free version (the cover even says fictionwise).
I do have one corrupted book, whether I download through the PC app or web. The app refuses to view it and I couldn't "free" it for my sony reader. Once I finish cataloging the other books, I will try downloading it again, otherwise will try my luck with B&N support.