FineReader doesn't do layout. If you rely on it to look good, you're going to get disappointed sooner or later. Think of this program as an extraction tool, because that's really what it's good for. Then you need to come in and redo the layout (InDesign, Word) after matching the fonts, cleaning up the graphics (maybe vectorizing some of them), etc. Don't expect to simply export as ePub and look good. It's not there yet.
I'd say you have a lot to learn. Judging from your posting style (lack of capitalization and punctuation), you probably don't have an eye for detail. This isn't mIRC, you know.