libusbmuxd is something different. You have neither the library nor the include files in the default path. They might be beneath /usr/local - if you really installed them - which might not be in your compiler's default search paths.
Please, the last thing I suggest to try is installing libusb-1.0.0-dev from the package list you provide. No need to C&P the compiler errors over again if they stay the same. And I really didn't intend this to get a hand-holding thread. Please understand that this is in an early stage and there might be better consumable versions for people who are still new to all this. It's rough around the edges. Please don't expect too much hand-holding. What you experience is basic compilation problems, not very specific to this software. That might sound harsh, but messing with non-related issues would make this thread go too far off-topic. One day when it's better tested, there might be statically compiled versions for x86 and x86_64.